IL_9BDN_072

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_072 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1362

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

9BDN|1|A18S|U|1347
9BDN|1|A18S|G|1348
9BDN|1|A18S|G|1349
*
9BDN|1|A18S|C|1380
9BDN|1|A18S|G|1381
9BDN|1|A18S|A|1382

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS00

40S_SA_C domain-containing protein

Chain AS02

40S ribosomal protein S2

Chain AS03

40S ribosomal protein S3

Chain AS17

40S ribosomal protein S17