IL_9BDN_076

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9BDN|1|A18S|C|1403, 9BDN|1|A18S|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_076 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1676

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

9BDN|1|A18S|A|1402
9BDN|1|A18S|C|1403
9BDN|1|A18S|U|1404
9BDN|1|A18S|A|1405
*
9BDN|1|A18S|U|1441
9BDN|1|A18S|U|1442
9BDN|1|A18S|C|1443
9BDN|1|A18S|U|1444

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ARAC

Receptor of activated protein C kinase 1

Chain AS16

Small ribosomal subunit protein uS9

Chain AS20

40S ribosomal protein S20