IL_9BDN_077

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_077 not in the Motif Atlas

Geometric match to IL_4V8Q_188

Geometric discrepancy: 0.2017

The information below is about IL_4V8Q_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9BDN|1|A18S|U|1408
9BDN|1|A18S|A|1409
9BDN|1|A18S|C|1410
*
9BDN|1|A18S|G|1431
9BDN|1|A18S|U|1432
9BDN|1|A18S|A|1438

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS16

Small ribosomal subunit protein uS9

Chain AS19

Small ribosomal subunit protein eS19

Chain AS20

40S ribosomal protein S20