IL_9BDN_084

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9BDN|1|A18S|C|1701, 9BDN|1|A18S|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_084 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1987

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|C|1700
9BDN|1|A18S|C|1701
9BDN|1|A18S|G|1702
*
9BDN|1|A18S|C|1833
9BDN|1|A18S|A|1834
9BDN|1|A18S|A|1835
9BDN|1|A18S|G|1836

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ANG

Angiogenin

Chain AS26

eS26

Chain MRNA

mRNA

Chain PTRN

Transfer RNA; tRNA