IL_9BDN_085
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_085 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1198
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A18S|G|1702
9BDN|1|A18S|C|1703
9BDN|1|A18S|C|1704
9BDN|1|A18S|C|1705
*
9BDN|1|A18S|G|1829
9BDN|1|A18S|U|1830
9BDN|1|A18S|A|1831
9BDN|1|A18S|A|1832
9BDN|1|A18S|C|1833
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain ANG
- Angiogenin
- Chain MRNA
- mRNA
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: