IL_9BDN_087
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 9BDN|1|A18S|A|1824, 9BDN|1|A18S|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_087 not in the Motif Atlas
- Geometric match to IL_6AZ4_001
- Geometric discrepancy: 0.2498
- The information below is about IL_6AZ4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69145.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A18S|C|1708
9BDN|1|A18S|G|1709
9BDN|1|A18S|C|1710
9BDN|1|A18S|U|1711
*
9BDN|1|A18S|A|1822
9BDN|1|A18S|A|1823
9BDN|1|A18S|A|1824
9BDN|1|A18S|A|1825
9BDN|1|A18S|G|1826
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain ANG
- Angiogenin
- Chain AS23
- 40S ribosomal protein S23
- Chain MRNA
- mRNA
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