IL_9BDN_090

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9BDN|1|A18S|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_090 not in the Motif Atlas

Homologous match to IL_8C3A_476

Geometric discrepancy: 0.3946

The information below is about IL_8C3A_476

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

9BDN|1|A18S|U|1720
9BDN|1|A18S|U|1721
9BDN|1|A18S|G|1722
*
9BDN|1|A18S|U|1812
9BDN|1|A18S|A|1813

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL23

60S ribosomal protein L23

Chain AL41

eL41

Chain AS23

40S ribosomal protein S23