IL_9BDN_099

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_099 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1446

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9BDN|1|A28S|G|16
9BDN|1|A28S|A|17
9BDN|1|A28S|C|18
*
9BDN|1|A58S|G|139
9BDN|1|A58S|C|140
9BDN|1|A58S|C|141

Current chains

Chain A28S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL15

60S ribosomal protein L15

Chain AL25

Large ribosomal subunit protein uL23

Chain AL35

60S ribosomal protein L35