IL_9BDN_104

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9BDN|1|A28S|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_104 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2729

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9BDN|1|A28S|C|118
9BDN|1|A28S|G|119
9BDN|1|A28S|A|120
9BDN|1|A28S|A|121
*
9BDN|1|A28S|U|152
9BDN|1|A28S|G|153

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL08

Large ribosomal subunit protein eL8

Chain AL15

60S ribosomal protein L15

Chain AL35

60S ribosomal protein L35