IL_9BDN_111
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 9BDN|1|A28S|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_111 not in the Motif Atlas
- Geometric match to IL_7RQB_073
- Geometric discrepancy: 0.2598
- The information below is about IL_7RQB_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9BDN|1|A28S|C|339
9BDN|1|A28S|C|340
9BDN|1|A28S|G|341
9BDN|1|A28S|G|342
*
9BDN|1|A58S|C|32
9BDN|1|A58S|G|33
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL37
- 60S ribosomal protein L37
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