IL_9BDN_122

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9BDN|1|A28S|G|666, 9BDN|1|A28S|A|667, 9BDN|1|A28S|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_122 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2124

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

9BDN|1|A28S|G|487
9BDN|1|A28S|G|488
*
9BDN|1|A28S|C|665
9BDN|1|A28S|G|666
9BDN|1|A28S|A|667
9BDN|1|A28S|C|668
9BDN|1|A28S|C|669

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

Large ribosomal subunit protein eL18

Chain ALNW

60S ribosomal protein L28