IL_9BDN_140

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_140 not in the Motif Atlas

Geometric match to IL_8CRE_417

Geometric discrepancy: 0.3849

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9BDN|1|A28S|C|1099
9BDN|1|A28S|U|1100
9BDN|1|A28S|G|1168
*
9BDN|1|A28S|C|1193
9BDN|1|A28S|G|1194
9BDN|1|A28S|G|1195
9BDN|1|A28S|G|1196

Current chains

Chain A28S

28S rRNA

Nearby chains