IL_9BDN_144

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_144 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2945

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9BDN|1|A28S|G|1425
9BDN|1|A28S|G|1426
9BDN|1|A28S|A|1427
9BDN|1|A28S|U|1428
9BDN|1|A28S|C|1429
*
9BDN|1|A28S|G|1455
9BDN|1|A28S|C|1456
9BDN|1|A28S|G|1457
9BDN|1|A28S|C|1458
9BDN|1|A28S|A|1459
9BDN|1|A28S|C|1460

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL18

Large ribosomal subunit protein eL18

Chain AL29

Large ribosomal subunit protein eL29