IL_9BDN_154

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|G|1625, 9BDN|1|A28S|A|1637, 9BDN|1|A28S|A|1638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_154 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0759

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9BDN|1|A28S|G|1624
9BDN|1|A28S|G|1625
9BDN|1|A28S|G|1626
*
9BDN|1|A28S|U|1636
9BDN|1|A28S|A|1637
9BDN|1|A28S|A|1638
9BDN|1|A28S|U|1639
9BDN|1|A28S|C|1640

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL15

60S ribosomal protein L15

Chain AL17

60S ribosomal protein L17

Chain AL37

60S ribosomal protein L37