IL_9BDN_178

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAGG*CCUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCAGG,CCUGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_178 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3331

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9BDN|1|A28S|G|1965
9BDN|1|A28S|C|1966
9BDN|1|A28S|A|1967
9BDN|1|A28S|G|1968
9BDN|1|A28S|G|1969
*
9BDN|1|A28S|C|2018
9BDN|1|A28S|C|2019
9BDN|1|A28S|U|2020
9BDN|1|A28S|G|2021
9BDN|1|A28S|C|2022

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL40

Large ribosomal subunit protein eL40

Chain ALP0

60S acidic ribosomal protein P0