IL_9BDN_179

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_179 not in the Motif Atlas

Geometric match to IL_6CZR_156

Geometric discrepancy: 0.252

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BDN|1|A28S|C|2083
9BDN|1|A28S|U|2084
9BDN|1|A28S|G|2085
*
9BDN|1|A28S|C|2272
9BDN|1|A28S|G|2273

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL07

60S ribosomal protein L7

Chain AL18

Large ribosomal subunit protein eL18

Chain AL32

Large ribosomal subunit protein eL32