IL_9BDN_188

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

9BDN|1|A28S|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_188 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2299

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9BDN|1|A28S|G|2542
9BDN|1|A28S|A|2543
9BDN|1|A28S|G|2544
9BDN|1|A28S|U|2545
9BDN|1|A28S|G|2546
9BDN|1|A28S|G|2547
*
9BDN|1|A28S|C|2772
9BDN|1|A28S|G|2773
9BDN|1|A28S|C|2774

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL38

Large ribosomal subunit protein eL38