IL_9BDN_190

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_190 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.1734

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9BDN|1|A28S|G|2556
9BDN|1|A28S|G|2557
9BDN|1|A28S|C|2558
*
9BDN|1|A28S|G|2569
9BDN|1|A28S|U|2570
9BDN|1|A28S|C|2571

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27