IL_9BDN_203

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9BDN|1|A28S|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_203 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0923

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9BDN|1|A28S|C|2867
9BDN|1|A28S|G|2868
9BDN|1|A28S|U|2869
9BDN|1|A28S|A|2870
9BDN|1|A28S|A|2871
9BDN|1|A28S|C|2872
*
9BDN|1|A28S|G|2877
9BDN|1|A28S|G|2878
9BDN|1|A28S|A|2879
9BDN|1|A28S|U|2880
9BDN|1|A28S|A|2881
9BDN|1|A28S|A|2882
9BDN|1|A28S|G|2883

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41

Chain AL43

60S ribosomal protein L37a