IL_9BDN_207

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9BDN|1|A28S|A|3663, 9BDN|1|A28S|U|3679, 9BDN|1|A28S|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_207 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0825

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|C|3660
9BDN|1|A28S|G|3661
9BDN|1|A28S|A|3662
9BDN|1|A28S|A|3663
9BDN|1|A28S|G|3664
9BDN|1|A28S|G|3665
*
9BDN|1|A28S|U|3677
9BDN|1|A28S|G|3678
9BDN|1|A28S|U|3679
9BDN|1|A28S|U|3680
9BDN|1|A28S|G|3681
9BDN|1|A28S|A|3682
9BDN|1|A28S|C|3683
9BDN|1|A28S|G|3684

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

60S ribosomal protein L8

Chain AL43

60S ribosomal protein L37a