IL_9BDN_212

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_212 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1986

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9BDN|1|A28S|U|3715
9BDN|1|A28S|C|3716
9BDN|1|A28S|A|3717
9BDN|1|A28S|A|3718
9BDN|1|A28S|A|3719
9BDN|1|A28S|G|3720
9BDN|1|A28S|U|3721
*
9BDN|1|A28S|A|3732
9BDN|1|A28S|A|3733
9BDN|1|A28S|U|3734
9BDN|1|A28S|G|3735
9BDN|1|A28S|A|3736
9BDN|1|A28S|A|3737
9BDN|1|A28S|G|3738

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL36

60S ribosomal protein L36

Chain ETRN

Transfer RNA; tRNA