IL_9BDN_214

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9BDN|1|A28S|A|3785, 9BDN|1|A28S|C|3791, 9BDN|1|A28S|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_214 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0809

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9BDN|1|A28S|C|3781
9BDN|1|A28S|C|3782
9BDN|1|A28S|A|3783
9BDN|1|A28S|A|3784
9BDN|1|A28S|A|3785
9BDN|1|A28S|U|3786
9BDN|1|A28S|G|3787
9BDN|1|A28S|C|3788
9BDN|1|A28S|C|3789
9BDN|1|A28S|U|3790
9BDN|1|A28S|C|3791
9BDN|1|A28S|G|3792
*
9BDN|1|A28S|C|3808
9BDN|1|A28S|G|3809
9BDN|1|A28S|C|3810
9BDN|1|A28S|G|3811

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41