IL_9BDN_241
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGC*GGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_241 not in the Motif Atlas
- Geometric match to IL_3ICQ_003
- Geometric discrepancy: 0.1729
- The information below is about IL_3ICQ_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70707.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 70
Unit IDs
9BDN|1|A28S|U|4580
9BDN|1|A28S|G|4581
9BDN|1|A28S|C|4582
*
9BDN|1|A28S|G|4721
9BDN|1|A28S|G|4722
9BDN|1|A28S|A|4723
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL03
- 60S ribosomal protein L3
- Chain AL16
- Large ribosomal subunit protein uL13
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