IL_9BDN_246

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

9BDN|1|A28S|U|4634, 9BDN|1|A28S|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_246 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2725

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

9BDN|1|A28S|U|4632
9BDN|1|A28S|G|4633
9BDN|1|A28S|U|4634
9BDN|1|A28S|A|4635
9BDN|1|A28S|U|4636
9BDN|1|A28S|G|4637
*
9BDN|1|A28S|C|4662
9BDN|1|A28S|G|4663
9BDN|1|A28S|A|4664
9BDN|1|A28S|A|4665
9BDN|1|A28S|G|4666

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL24

Ribosomal protein L24

Chain AL31

60S ribosomal protein L31