IL_9BDN_249

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9BDN|1|A28S|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_249 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2361

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9BDN|1|A28S|G|4680
9BDN|1|A28S|A|4681
9BDN|1|A28S|U|4682
9BDN|1|A28S|U|4683
9BDN|1|A28S|A|4684
9BDN|1|A28S|U|4685
*
9BDN|1|A28S|A|4705
9BDN|1|A28S|G|4706
9BDN|1|A28S|A|4707
9BDN|1|A28S|A|4708
9BDN|1|A28S|U|4709
9BDN|1|A28S|C|4710

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

Large ribosomal subunit protein uL13

Chain AL40

Large ribosomal subunit protein eL40