IL_9BDN_252

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_252 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3145

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9BDN|1|A28S|G|4769
9BDN|1|A28S|U|4770
9BDN|1|A28S|C|4771
9BDN|1|A28S|C|4772
9BDN|1|A28S|C|4773
*
9BDN|1|A28S|G|4862
9BDN|1|A28S|G|4863
9BDN|1|A28S|U|4864
9BDN|1|A28S|C|4865

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

Large ribosomal subunit protein uL13