IL_9BDN_268

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9BDN|1|A5S|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_268 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.0881

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BDN|1|A5S|G|82
9BDN|1|A5S|A|83
9BDN|1|A5S|U|84
9BDN|1|A5S|G|85
*
9BDN|1|A5S|C|92
9BDN|1|A5S|G|93
9BDN|1|A5S|C|94

Current chains

Chain A5S

5S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL07

60S ribosomal protein L7

Chain AL10

Ribosomal protein L10

Chain AL20

60S ribosomal protein L18a