IL_9BDN_273

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAGC*GUCCCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_273 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3285

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|G|690
9BDN|1|A18S|G|691
9BDN|1|A18S|G|692
9BDN|1|A18S|A|693
9BDN|1|A18S|G|694
9BDN|1|A18S|C|695
*
9BDN|1|A18S|G|731
9BDN|1|A18S|U|732
9BDN|1|A18S|C|733
9BDN|1|A18S|C|734
9BDN|1|A18S|C|735
9BDN|1|A18S|C|736

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS07

Small ribosomal subunit protein eS7

Chain AS22

40S ribosomal protein S15a