IL_9BDN_276
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_276 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3328
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A18S|C|1098
9BDN|1|A18S|G|1099
9BDN|1|A18S|A|1100
9BDN|1|A18S|U|1101
9BDN|1|A18S|G|1102
9BDN|1|A18S|C|1103
*
9BDN|1|A18S|G|1129
9BDN|1|A18S|G|1130
9BDN|1|A18S|G|1131
9BDN|1|A18S|C|1132
9BDN|1|A18S|A|1133
9BDN|1|A18S|G|1134
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS00
- 40S_SA_C domain-containing protein
- Chain AS01
- 40S ribosomal protein S3a
- Chain AS13
- 40S ribosomal protein S13
- Chain AS17
- 40S ribosomal protein S17
- Chain AS26
- eS26
- Chain AS27
- 40S ribosomal protein S27
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