IL_9BDP_013

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9BDP|1|A18S|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_013 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1393

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9BDP|1|A18S|G|145
9BDP|1|A18S|G|146
9BDP|1|A18S|A|147
9BDP|1|A18S|U|148
9BDP|1|A18S|A|149
9BDP|1|A18S|A|150
9BDP|1|A18S|C|151
*
9BDP|1|A18S|G|167
9BDP|1|A18S|C|168
9BDP|1|A18S|U|169
9BDP|1|A18S|A|170
9BDP|1|A18S|A|171
9BDP|1|A18S|U|172
9BDP|1|A18S|A|173
9BDP|1|A18S|C|174

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6

Chain AS24

40S ribosomal protein S24