IL_9BDP_017

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAU,AUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_017 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1842

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9BDP|1|A18S|U|220
9BDP|1|A18S|A|221
9BDP|1|A18S|U|222
*
9BDP|1|A18S|A|299
9BDP|1|A18S|U|300
9BDP|1|A18S|A|301

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS08

40S ribosomal protein S8

Chain AS11

40S ribosomal protein S11