IL_9BDP_051
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 9BDP|1|A18S|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_051 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1917
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
9BDP|1|A18S|G|952
9BDP|1|A18S|C|953
9BDP|1|A18S|U|954
9BDP|1|A18S|A|955
9BDP|1|A18S|G|956
*
9BDP|1|A18S|C|967
9BDP|1|A18S|U|968
9BDP|1|A18S|U|969
9BDP|1|A18S|G|970
9BDP|1|A18S|G|971
9BDP|1|A18S|A|972
9BDP|1|A18S|C|973
9BDP|1|A18S|C|974
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS01
- 40S ribosomal protein S3a
- Chain AS14
- Small ribosomal subunit protein uS11
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