IL_9BDP_058

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_058 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2377

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

9BDP|1|A18S|U|1112
9BDP|1|A18S|A|1113
9BDP|1|A18S|U|1114
*
9BDP|1|A18S|A|1119
9BDP|1|A18S|U|1120
9BDP|1|A18S|G|1121

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS01

40S ribosomal protein S3a

Chain AS27

40S ribosomal protein S27