IL_9BDP_059
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_059 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.103
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9BDP|1|A18S|G|1168
9BDP|1|A18S|G|1169
9BDP|1|A18S|A|1170
9BDP|1|A18S|G|1171
9BDP|1|A18S|U|1172
9BDP|1|A18S|A|1173
9BDP|1|A18S|U|1174
9BDP|1|A18S|G|1175
*
9BDP|1|A18S|U|1186
9BDP|1|A18S|G|1187
9BDP|1|A18S|A|1188
9BDP|1|A18S|A|1189
9BDP|1|A18S|A|1190
9BDP|1|A18S|C|1191
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain AS23
- 40S ribosomal protein S23
Coloring options: