IL_9BDP_072

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_072 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.2071

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9BDP|1|A18S|C|1363
9BDP|1|A18S|U|1364
9BDP|1|A18S|G|1365
*
9BDP|1|A18S|C|1374
9BDP|1|A18S|G|1375

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS17

40S ribosomal protein S17

Chain AS26

eS26