IL_9BDP_082

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_082 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1413

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9BDP|1|A18S|G|1702
9BDP|1|A18S|C|1703
9BDP|1|A18S|C|1704
9BDP|1|A18S|C|1705
*
9BDP|1|A18S|G|1829
9BDP|1|A18S|U|1830
9BDP|1|A18S|A|1831
9BDP|1|A18S|A|1832
9BDP|1|A18S|C|1833

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL41

eL41

Chain ANG

Angiogenin

Chain MRNA

mRNA

Chain PTRN

Transfer RNA; tRNA