IL_9BDP_087

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9BDP|1|A18S|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_087 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.1399

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BDP|1|A18S|U|1720
9BDP|1|A18S|U|1721
9BDP|1|A18S|G|1722
*
9BDP|1|A18S|U|1812
9BDP|1|A18S|A|1813

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL23

60S ribosomal protein L23

Chain AL41

eL41

Chain AS23

40S ribosomal protein S23