IL_9BDP_093

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_093 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2084

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

9BDP|1|A18S|C|1742
9BDP|1|A18S|G|1743
9BDP|1|A18S|G|1744
9BDP|1|A18S|A|1745
9BDP|1|A18S|U|1746
*
9BDP|1|A18S|A|1788
9BDP|1|A18S|G|1789
9BDP|1|A18S|A|1790
9BDP|1|A18S|A|1791
9BDP|1|A18S|G|1792

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL24

Ribosomal protein L24

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8