IL_9BDP_135

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_135 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.2168

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

9BDP|1|A28S|C|1081
9BDP|1|A28S|C|1082
*
9BDP|1|A28S|G|1217
9BDP|1|A28S|G|1218
9BDP|1|A28S|G|1219

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL29

Large ribosomal subunit protein eL29