IL_9BDP_144

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_144 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3202

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BDP|1|A28S|G|1425
9BDP|1|A28S|G|1426
9BDP|1|A28S|A|1427
9BDP|1|A28S|U|1428
9BDP|1|A28S|C|1429
*
9BDP|1|A28S|G|1455
9BDP|1|A28S|C|1456
9BDP|1|A28S|G|1457
9BDP|1|A28S|C|1458
9BDP|1|A28S|A|1459
9BDP|1|A28S|C|1460

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL18

Large ribosomal subunit protein eL18

Chain AL29

Large ribosomal subunit protein eL29