IL_9BDP_154
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9BDP|1|A28S|G|1625, 9BDP|1|A28S|A|1637, 9BDP|1|A28S|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_154 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1294
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BDP|1|A28S|G|1624
9BDP|1|A28S|G|1625
9BDP|1|A28S|G|1626
*
9BDP|1|A28S|U|1636
9BDP|1|A28S|A|1637
9BDP|1|A28S|A|1638
9BDP|1|A28S|U|1639
9BDP|1|A28S|C|1640
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL15
- 60S ribosomal protein L15
- Chain AL17
- 60S ribosomal protein L17
- Chain AL37
- 60S ribosomal protein L37
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