3D structure

PDB id
9BDP (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCGAAU*AAAC
Length
10 nucleotides
Bulged bases
9BDP|1|A28S|G|1741
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BDP_161 not in the Motif Atlas
Homologous match to IL_5TBW_040
Geometric discrepancy: 0.1207
The information below is about IL_5TBW_040
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_02509.3
Basepair signature
cWW-cWS-cWW-cWW-R-cSH-tWH-R
Number of instances in this motif group
6

Unit IDs

9BDP|1|A28S|G|1739
9BDP|1|A28S|C|1740
9BDP|1|A28S|G|1741
9BDP|1|A28S|A|1742
9BDP|1|A28S|A|1743
9BDP|1|A28S|U|1744
*
9BDP|1|A28S|A|1786
9BDP|1|A28S|A|1787
9BDP|1|A28S|A|1788
9BDP|1|A28S|C|1789

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain A5S
5S ribosomal RNA; 5S rRNA
Chain AL05
60S ribosomal protein L5
Chain AL10
Ribosomal protein L10
Chain AL21
60S ribosomal protein L21

Coloring options:


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