IL_9BDP_162

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_162 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.154

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9BDP|1|A28S|G|1745
9BDP|1|A28S|A|1746
9BDP|1|A28S|U|1747
9BDP|1|A28S|U|1748
9BDP|1|A28S|A|1749
*
9BDP|1|A28S|U|1781
9BDP|1|A28S|U|1782
9BDP|1|A28S|C|1783
9BDP|1|A28S|U|1784
9BDP|1|A28S|C|1785

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

60S ribosomal protein L5

Chain AL10

Ribosomal protein L10