IL_9BDP_201

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9BDP|1|A28S|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_201 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1252

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9BDP|1|A28S|C|2867
9BDP|1|A28S|G|2868
9BDP|1|A28S|U|2869
9BDP|1|A28S|A|2870
9BDP|1|A28S|A|2871
9BDP|1|A28S|C|2872
*
9BDP|1|A28S|G|2877
9BDP|1|A28S|G|2878
9BDP|1|A28S|A|2879
9BDP|1|A28S|U|2880
9BDP|1|A28S|A|2881
9BDP|1|A28S|A|2882
9BDP|1|A28S|G|2883

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41

Chain AL43

60S ribosomal protein L37a