IL_9BDP_205

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9BDP|1|A28S|A|3663, 9BDP|1|A28S|U|3679, 9BDP|1|A28S|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_205 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1004

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9BDP|1|A28S|C|3660
9BDP|1|A28S|G|3661
9BDP|1|A28S|A|3662
9BDP|1|A28S|A|3663
9BDP|1|A28S|G|3664
9BDP|1|A28S|G|3665
*
9BDP|1|A28S|U|3677
9BDP|1|A28S|G|3678
9BDP|1|A28S|U|3679
9BDP|1|A28S|U|3680
9BDP|1|A28S|G|3681
9BDP|1|A28S|A|3682
9BDP|1|A28S|C|3683
9BDP|1|A28S|G|3684

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

60S ribosomal protein L8

Chain AL43

60S ribosomal protein L37a