IL_9BDP_209
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_209 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1972
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BDP|1|A28S|U|3715
9BDP|1|A28S|C|3716
9BDP|1|A28S|A|3717
9BDP|1|A28S|A|3718
9BDP|1|A28S|A|3719
9BDP|1|A28S|G|3720
9BDP|1|A28S|U|3721
*
9BDP|1|A28S|A|3732
9BDP|1|A28S|A|3733
9BDP|1|A28S|U|3734
9BDP|1|A28S|G|3735
9BDP|1|A28S|A|3736
9BDP|1|A28S|A|3737
9BDP|1|A28S|G|3738
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL36
- 60S ribosomal protein L36
- Chain AL42
- eL42
- Chain ETRN
- Transfer RNA; tRNA
Coloring options: