IL_9BDP_212

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9BDP|1|A28S|A|3785, 9BDP|1|A28S|C|3791, 9BDP|1|A28S|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_212 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1361

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9BDP|1|A28S|C|3781
9BDP|1|A28S|C|3782
9BDP|1|A28S|A|3783
9BDP|1|A28S|A|3784
9BDP|1|A28S|A|3785
9BDP|1|A28S|U|3786
9BDP|1|A28S|G|3787
9BDP|1|A28S|C|3788
9BDP|1|A28S|C|3789
9BDP|1|A28S|U|3790
9BDP|1|A28S|C|3791
9BDP|1|A28S|G|3792
*
9BDP|1|A28S|C|3808
9BDP|1|A28S|G|3809
9BDP|1|A28S|C|3810
9BDP|1|A28S|G|3811

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41