IL_9BDP_232

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9BDP|1|A28S|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_232 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1406

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9BDP|1|A28S|G|4405
9BDP|1|A28S|U|4406
9BDP|1|A28S|G|4407
*
9BDP|1|A28S|U|4435
9BDP|1|A28S|U|4436
9BDP|1|A28S|U|4437
9BDP|1|A28S|U|4438
9BDP|1|A28S|U|4439

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL10

Ribosomal protein L10