IL_9BDP_235

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9BDP|1|A28S|G|4522, 9BDP|1|A28S|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_235 not in the Motif Atlas

Homologous match to IL_5TBW_108

Geometric discrepancy: 0.1346

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9BDP|1|A28S|C|4456
9BDP|1|A28S|U|4457
9BDP|1|A28S|C|4458
*
9BDP|1|A28S|G|4520
9BDP|1|A28S|U|4521
9BDP|1|A28S|G|4522
9BDP|1|A28S|A|4523
9BDP|1|A28S|G|4524

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL23

60S ribosomal protein L23