IL_9BDP_241

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9BDP|1|A28S|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_241 not in the Motif Atlas

Geometric match to IL_4V88_409

Geometric discrepancy: 0.2606

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9BDP|1|A28S|C|4537
9BDP|1|A28S|G|4538
*
9BDP|1|A28S|C|4547
9BDP|1|A28S|A|4548
9BDP|1|A28S|G|4549

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain PTRN

Transfer RNA; tRNA